Sequence alignment in Python, and with no intermediate files

YouTube Excerpt: Here I show you how to align sequences in Python all while using STDOUT and STDIN so no files need to be written and everything is done in RAM. I use mafft as the aligner, but I supply the sequences as a python object and read the alignment as a python object. I show global alignment, but the same principles can be used with other aligners and for other purposes. Notebook: https://github.com/mousepixels/sanbomics_scripts/blob/main/python_sequence_alignment.ipynb

Here I show you how to align sequences in Python all while using STDOUT and STDIN so no files need to be written and everything is done in RAM. I...

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