IGV Tutorial Part 4: Artifacts vs True Variants

YouTube Excerpt: This is part 4 in an IGV tutorial series for beginners. Here we use the IGV tools we learned about in part 3 to distinguish sequencing artifacts from true variants (aka mutations). First we list the clues we will use to identify artifacts, and then look at examples of both artifacts and true variants. Video 1: Introduction, downloading and installing IGV Video 2: File types that can be used in IGV, viewing DNA alignments Video 3: Basic layout and software tools for DNA alignment viewing/analysis Video 4: Viewing SNPs and indels, distinguishing true variants from artifacts Video 5: Viewing/interpreting structural variants IGV stands for "Integrated Genomics Viewer," and is an open source software for viewing various types of genomic data. In this tutorial series we look at Next Generation Sequencing data produced by a gene panel designed to identify mutations that could be clinically relevant to cancer identification and treatment.

This is part 4 in an IGV tutorial series for beginners. Here we use the IGV tools we learned about in part 3 to distinguish sequencing artifacts...

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